Introduction to Statistics with Python

Overview

Statistics are an integral aspect of scientific research, particularly for the life sciences which rely heavily on quantitative methodologies. This course is designed to provide researchers in the life sciences with an introduction to statistics and statistical concepts and their application to a variety of biological problems.

The course will combine lectures on statistics, short tutorials and practical exercises on the topics discussed in the class. These practical exercises will be implemented in the widely used Python language and environment for statistical computing and graphics.

Topics covered during the course include:

• Data manipulation, summarization and plotting : reminder/intro to data manipulation in Python
• Hypothesis testing : when to use it and how?
• Correlation and regression analysis

Audience

This course is intended for life scientists from all levels and disciplines who are not experts in statistics.

Although we will provide materials and a reminder on data mamipulation in Python, participants must be comfortable with the Python environment and be able to read, understand and write basic Python commands before attending this course.

Learning objectives

At the end of the course, participants should be able to :

• explore their data, choose the right method to summarize it, graphically and numerically.
• perform appropriate basic hypothesis tests on a datatest.
• appraise the results and limitations of these tests, their underlying hypotheses, and multiple testing issues.
• assess and describe the link between different variables, using correlation and regression analysis.

Prerequisites

Knowledge / competencies

• No prior statistical knowledge is required in order to attend the course
• Completion of a basic/introductory course on Python

Before registering, you may test your Python skills this quizz. We recommend a score of at least 3/5 in order to benefit from the course.

Technical

Please make sure that the following software is installed on your machine PRIOR to the course:

• latest python3 distribution, preferably bundled using conda
• jupyter
• the scipy library (NB: if you installed conda, then this library is already installed)

Application

The registration fees for academics are 120 CHF and 600 CHF for for-profit companies.

You will be informed by email of your registration confirmation. Upon reception of the confirmation email, participants will be asked to confirm attendance by paying the fees within 5 days.

Deadline for free-of-charge cancellation is set to 09/06/2022. Cancellation after this date will not be reimbursed. Please note that participation in SIB courses is subject to our general conditions.

Venue and Time

This course will take place at the University of Basel. More details will be communicated to the participants.

The course will start at 9:00 and end around 17:00. Precise information will be provided to the participants in due time.

Additional information

Coordination: Grégoire Rossier

We will recommend 0.5 ECTS credits for this course (given a passed exam at the end of the course).

You are welcome to register to the SIB courses mailing list to be informed of all future courses and workshops, as well as all important deadlines using the form here.

Please note that participation in SIB courses is subject to our general conditions.

SIB abides by the ELIXIR Code of Conduct. Participants of SIB courses are also required to abide by the same code.

For more information, please contact training@sib.swiss.